Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRSYRPAPPIERVVLLNDRGDATGVADKATVHTGDTPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELGLTPDRVDLILPGFRYRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQFVRDVTAGVIA---PVSPWCRSQLGYLTKLGPCPAQWPVADDCRLPKAAHGN
2VNP Chain:A ((4-165))
-----------EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD----LADVLHGIDATPWAFSPWMVMQ-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62830 for 1214 contacts (-51.8/contact) +
2D Compatibility (PS) -17373 + (NN) -9446 + (LL) 1932
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -103567.0 ( -85.31 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_2VNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VNP-query.scw
PDB file :
Tito_Scwrl_2VNP.pdb
: