Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNAVEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
2LQJ Chain:A ((141-234))
--------------------------------------------------------------------------------------------------------------------------------------------VEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
General information:
TITO was launched using:
RESULT:
Template:
2LQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60463 for 670 contacts (-90.2/contact) +
2D Compatibility (PS) -10222 + (NN) -3045 + (LL) 10420
1D Compatibility (HY) -12000 + (ID) 4700
Total energy: -80010.0 ( -119.42 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_2LQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQJ-query.scw
PDB file :
Tito_Scwrl_2LQJ.pdb
: