Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCQTCRVGKRRDAREQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEH-----
5D1R Chain:A ((13-239))
------------AREQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
5D1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157377 for 1629 contacts (-96.6/contact) +
2D Compatibility (PS) -24332 + (NN) -14395 + (LL) 800
1D Compatibility (HY) -31200 + (ID) 11100
Total energy: -237604.0 ( -145.86 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_5D1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D1R-query.scw
PDB file :
Tito_Scwrl_5D1R.pdb
: