Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDQELELRFDVPLYTLAEASRYLVVPRATLATWADGYERRPANAPAVQGQPIITALPHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRIRPSLDWLIKNVGPHALASQDLCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQISFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVADDYGVTPDQLRDALDAIAA
5AF3 Chain:A ((11-238))
--------LRFDVPLYTLAEASRYLVVPRATLATWAD--------------QPIITALPHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRIRPSLDWLIKNVGPHALASQDLCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQISFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVADDYGVTPDQLRDALDA---
General information:
TITO was launched using:
RESULT:
Template:
5AF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166311 for 1746 contacts (-95.3/contact) +
2D Compatibility (PS) -23082 + (NN) -12496 + (LL) 1536
1D Compatibility (HY) -30000 + (ID) 10700
Total energy: -241053.0 ( -138.06 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_5AF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AF3-query.scw
PDB file :
Tito_Scwrl_5AF3.pdb
: