Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLPVQRHPRSLFPEFSELFAAFPSFAGLRPTFDTRL---MRLEDEMKEGR--YEVRAELPGVDPDKDVDIMVRDGQLTIKAE-----RTEQKDFDGR-SEFAYGSFVRTVSLPVGADEDDIKATYDKGILTVSVAVSEGKPTEKHIQIRSTN
3W1Z Chain:A ((11-143))
---------------PTVNDLFSDFVSYS---PRLNNQIPGELSPSIDVHEGKDTVSVDVELPGVKKE-DVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFSNGLLTVTLPKVEKSQTKKQIAIK---
General information:
TITO was launched using:
RESULT:
Template:
3W1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43270 for 666 contacts (-65.0/contact) +
2D Compatibility (PS) -13279 + (NN) -6636 + (LL) 1300
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -73285.0 ( -110.04 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3W1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W1Z-query.scw
PDB file :
Tito_Scwrl_3W1Z.pdb
: