Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTRFGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPG-WESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2L65 Chain:A ((6-148))
--------VRHSVTVKADRKTAFKTFLEGFPEWWP--NNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWRLNGFGRIDPD--NSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDK--GWPTILQSFQDKI------
General information:
TITO was launched using:
RESULT:
Template:
2L65.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42055 for 889 contacts (-47.3/contact) +
2D Compatibility (PS) -15021 + (NN) -5874 + (LL) 1764
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -70036.0 ( -78.78 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_2L65.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L65-query.scw
PDB file :
Tito_Scwrl_2L65.pdb
: