Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALIIVDVQNDFCEGGSLAVTGGAALARAISDYLAEAADYHHVVATKDFHIDPGDHFSGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAYTGAYSGFEGVDENGTPLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVELVCSS
3PL1 Chain:A ((1-185))
MRALIIVDVQNDFCEGGSLAVTGGAALARAISDYLAEAADYHHVVATKDFHIDPGDHFSGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAYTGAYSGFEGVDENGTPLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVELVCS-
General information:
TITO was launched using:
RESULT:
Template:
3PL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108777 for 1529 contacts (-71.1/contact) +
2D Compatibility (PS) -20938 + (NN) -15351 + (LL) -28
1D Compatibility (HY) -23600 + (ID) 9250
Total energy: -177944.0 ( -116.38 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3PL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PL1-query.scw
PDB file :
Tito_Scwrl_3PL1.pdb
: