Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MTGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVGDRVPSHAVPSPL
1W66 Chain:A ((1-218))
GAMAGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLP--------------
General information:
TITO was launched using:
RESULT:
Template:
1W66.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136218 for 1788 contacts (-76.2/contact) +
2D Compatibility (PS) -23225 + (NN) -11838 + (LL) 316
1D Compatibility (HY) -28800 + (ID) 10750
Total energy: -210515.0 ( -117.74 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_1W66.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W66-query.scw
PDB file :
Tito_Scwrl_1W66.pdb
: