Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDVLRTPDSRFEHLVGYPFAPHYVDVTAGDTQPLRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLVVANGFLPAAQGRTPLPFYVWRAFARYSPVLPAGRLVNFGTVHRVPAGVRAGYDAPFPDKTYQAGARAFPRLVPTSPDDPAVPANRAAWEALGRWDKPFLAIFGYRDPILGQADGPLIKHIPGAAGQPHARI-KASHFIQEDSGTELAERMLSWQQAT |
4MJ3 Chain:A ((1-301)) | MDVLRTPDERFTALPDFPFAPRYVEVDSGDGGTLRMHYLDEGRSDGEVVLLLHGEPSWSYLYRWMIPVLVEAGLRAVAIDLVGFGRSDKPTSRDDYTYQAHVDWMWAAIEEIGLADVTLVCQDWGGLIGLRLVGEHPDRFARVVAANTMLPTGDHHPGEAFLAWQKFSQEVPLFPAGQIVNGGSLSTLSAETIAAYDAPFPDASYQAGARQFPMLVPISPDDPATPANRKAWAALGRFEKPFLSAFSDSDPITGAAEPVLRGHVPGARGQSHVTIAGAGHFLQEDKGRELAEAVVTFVRAN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MJ3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171617 for 2725 contacts (-63.0/contact) +
2D Compatibility (PS) -32009 + (NN) -19744 + (LL) 0
1D Compatibility (HY) -26800 + (ID) 8550
Total energy: -258720.0 ( -94.94 by residue)
QMean score : 0.521
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