Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEPQHAVNIVLKEAARSGRADETMVLVTEKVEATLRWAGNSMTTNGVSHSRNVTVISIVRRGDSAFVGSVVSAEVDPSVLPGLVVSSQDAARSAPEAGDAAPLLADTGEPDDWDAPVPGTGAGVFTGIAGSLSRGFRGADRLYGYAHRSVSTTFLASSTGLRRRYTQPTGAIEINAKRGD---ASAWVGIGTPDFVEVPIDLMLERLSTRLRWAQRTVELPAGRYQTIMPPSTVADMMIYLGWSMAGRGAQEGRTAFSAPGGGTRVGERLTELPLTLFTDPAAPGLACTPFVAVSNSSETQSVFDNGMEISQVDWIRSGVINALAYPRATAAKFD-------APVAVAADNLIMTGGSADLADMIAGTERGLLLTTLWYIRE-VDPTTLLLTGLTRDGVYLVEDGEVSAAVNNFRFNESPLDLLRRATEAGVSEPTLPREWSDWVTRTAMPPLRIPDFHMSSVSQAQ |
| 1VL4 Chain:A ((2-433)) | --TFEEFKDRLFALAKKNG--VEVQISFLETREFSLRLANGDLDQYTDAGKFNVE-IKVLKDGKTGTFRTQVLENPEKCFEEALSNLQVKKEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESAAKDER---VVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPEDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISAENVQKNLSPLK-----GKLGEQVGNPAVSIKDLPYHP-----------KGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAK--GYWVENGEIAHGVEDITISGNFLDLLRKIVLVGND--------VKVSQHTIAPSVLVEVLDVA------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VL4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140385 for 3505 contacts (-40.1/contact) +
2D Compatibility (PS) -43109 + (NN) -5192 + (LL) 1828
1D Compatibility (HY) -10000 + (ID) 3200
Total energy: -200058.0 ( -57.08 by residue)
QMean score : 0.345
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