Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALSPS
1KNC Chain:C ((3-175))
--IEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS--
General information:
TITO was launched using:
RESULT:
Template:
1KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94849 for 1413 contacts (-67.1/contact) +
2D Compatibility (PS) -18929 + (NN) -12293 + (LL) 12
1D Compatibility (HY) -22400 + (ID) 8650
Total energy: -157109.0 ( -111.19 by residue)
QMean score : 0.806
(partial model without unconserved sides chains):
PDB file :
Tito_1KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNC-query.scw
PDB file :
Tito_Scwrl_1KNC.pdb
: