Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSRRDVLKFAAATPGVLGLGVVASSLRAAPASAGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
4PMO Chain:A ((24-234))
-----------------------------NLYFQGGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
General information:
TITO was launched using:
RESULT:
Template:
4PMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77611 for 1835 contacts (-42.3/contact) +
2D Compatibility (PS) -23020 + (NN) -12049 + (LL) 2152
1D Compatibility (HY) -24400 + (ID) 10250
Total energy: -145178.0 ( -79.12 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4PMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PMO-query.scw
PDB file :
Tito_Scwrl_4PMO.pdb
: