Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
2FR2 Chain:A ((4-164))
---DLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
General information:
TITO was launched using:
RESULT:
Template:
2FR2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68081 for 1200 contacts (-56.7/contact) +
2D Compatibility (PS) -17274 + (NN) -10227 + (LL) 360
1D Compatibility (HY) -21200 + (ID) 8050
Total energy: -124472.0 ( -103.73 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2FR2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FR2-query.scw
PDB file :
Tito_Scwrl_2FR2.pdb
: