Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHCPFCRHPDSRVIDSRETDEGQAIRRRRSCPECGRRFTTVETAVLAVVKRSGVTEPFSREKVISGVRRACQGRQVDDDALNLLAQQVEDSVRAAGSPEIPSHDVGLAILGPLRELDEVAYLRFASVYRSFSSADDFAREIEALRAHRNLSAHS
1YSH Chain:D ((37-65))
YFCEFCGKFA--VK--RKAV-G--I---WGCKDCGKVKA-------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7664 for 152 contacts (-50.4/contact) +
2D Compatibility (PS) -3215 + (NN) -4326 + (LL) 9148
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -8957.0 ( -58.93 by residue)
QMean score : 0.741
(partial model without unconserved sides chains):
PDB file :
Tito_1YSH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSH-query.scw
PDB file :
Tito_Scwrl_1YSH.pdb
: