Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLDLTGRTAIITGASRGIGLAIAQQLAAAGAHVVLT-ARRQEAADEAAAQV---GDRALGVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLLEQDHARFAKIFDVNLWAPLMWTSLVVTAWMGEHGGAVVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSPR-IRVNAICPGVVRTRLAEALWKDHEDPLAATIALGRIGEPADIASAVAFLVSDAASWITGETMIIDGGLLLGNALGFRAAPSTEH
2UVD Chain:A ((2-246))
-----LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKD-NLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM--------------
General information:
TITO was launched using:
RESULT:
Template:
2UVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175574 for 2123 contacts (-82.7/contact) +
2D Compatibility (PS) -25840 + (NN) -7240 + (LL) 872
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -230682.0 ( -108.66 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2UVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVD-query.scw
PDB file :
Tito_Scwrl_2UVD.pdb
: