Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
1LU4 Chain:A ((1001-1134))
-------------------------------------ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL--
General information:
TITO was launched using:
RESULT:
Template:
1LU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93769 for 1053 contacts (-89.0/contact) +
2D Compatibility (PS) -14605 + (NN) -7231 + (LL) 3804
1D Compatibility (HY) -17600 + (ID) 6650
Total energy: -136051.0 ( -129.20 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1LU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LU4-query.scw
PDB file :
Tito_Scwrl_1LU4.pdb
: