Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4K6X Chain:B ((15-213))
--------------------------------------------------------PGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
General information:
TITO was launched using:
RESULT:
Template:
4K6X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143003 for 1656 contacts (-86.4/contact) +
2D Compatibility (PS) -21409 + (NN) -8356 + (LL) 3388
1D Compatibility (HY) -24800 + (ID) 9950
Total energy: -204130.0 ( -123.27 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_4K6X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K6X-query.scw
PDB file :
Tito_Scwrl_4K6X.pdb
: