Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
2WP4 Chain:B ((2-136))
-ANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHN---DVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFS-----------
General information:
TITO was launched using:
RESULT:
Template:
2WP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100459 for 974 contacts (-103.1/contact) +
2D Compatibility (PS) -14938 + (NN) -10507 + (LL) 384
1D Compatibility (HY) -19200 + (ID) 6600
Total energy: -151320.0 ( -155.36 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2WP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP4-query.scw
PDB file :
Tito_Scwrl_2WP4.pdb
: