Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKNAVLLACRAPSVHNSQPWRWVAESGSEHTTVHLFVNRHRTVPATDHSGRQAIISCGAVLDHLRIAMTAAHWQANITRFPQPNQPDQLATVEFSPIDHVTAGQRNRAQAILQRRTDRLPFDSPMYWHLFEPALRDAVDKDVAMLDVVSDDQRTRLVVASQLSEVLRRDDPYYHAELEWWTSPFVLAHGVPPDTLASDAERLRVDLGRDFPVRSYQNRRAELADDRSKVLVLSTPSDTRADALRCGEVLSTILLECTMAGMATCTLTHLIESSDSRDIVRGLTRQRGEPQALIRVGIAPPLAAVPAPTPRRPLDSVLQIRQTPEKGRNASDRNARETGWFSPP |
2YMV Chain:A ((12-327)) | -LANAVQLAARAPSLHNTQPWRLIAEDGE----LKLFLDPSRVVRSTDRSSREAVMSCGVLLDHLRVALAAAGWDTEVQRFPNPNDRDHLATLSFRPLQFVTEGHRKRADAILARRTDRLPMSAYVDWDAFETLLRARLGDGPVHMDTLGEDVREEVAEAAALTESLRLYDAAYHSELAWWTTPFATEDGIPQTALISAEESERVAVSRDFPVAPHSSRRPALNNDAATIVVLSTDGYSREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDACPQVLVRIGLAPALDEVPPPTPRRPVDAFLEVR----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122270 for 2655 contacts (-46.1/contact) +
2D Compatibility (PS) -34431 + (NN) -25604 + (LL) 776
1D Compatibility (HY) -25600 + (ID) 7750
Total energy: -214879.0 ( -80.93 by residue)
QMean score : 0.425
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