Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNTHFPDAETVRTVLTLAVRAPSIHNTQPWRWRVCPTS-LELFSRPDMQLRSTDPDGRELILSCGVALHHCVVALASLGWQAKVNRFPDPKDRCHLATIGVQP-LVPDQADVALAAAIPRRRTDRRAYSCWPVPGGDIALMAARAARGGVMLRQVS--ALDRMKAIVAQAVLDHVTDEEYLRELTIWSGRYGSVAGVPARNEPPSDPSA-PIPGRLFAGPGLSQPSDVLPADDGAAILALGTETDDRLARLRAGEAASIVLLTATAMGLACCPITEPLEIAKTRDAVRAEVFGAGGYPQMLLRVGWAPINADPLPPTPRRELSQVVEWPEELLRQRC |
| 2YMV Chain:A ((3-327)) | -SDTRLDVATLANAVQLAARAPSLHNTQPWRLIA-EDGELKLFLDPSRVVRSTDRSSREAVMSCGVLLDHLRVALAAAGWDTEVQRFPNPNDRDHLATLSFRPLQFVTEGHRKRADAILARRTDRLPMSAYVDWDAFETLLRARLGDGPVHMDTLGEDVREEVAEAAALTESLRLYDAAYHSELAWWTTPFATEDGIPQTALISAEESERVAVSRDFPVAPH-SSRRPALNNDAATIVVLSTDGYSREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLI-VRDACPQVLVRIGLAPALDEVPPPTPRRPVDAFLEVR-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124836 for 2658 contacts (-47.0/contact) +
2D Compatibility (PS) -35324 + (NN) -31459 + (LL) 1304
1D Compatibility (HY) -12000 + (ID) 5600
Total energy: -207915.0 ( -78.22 by residue)
QMean score : 0.358
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