Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEIPIAAPDLLGHGRSPWA--APWTIDANVSALAALLDNQGDGPVVVVGHSFGGAVAMHLAAARPDQVAALVLLD--PAVALDGSRV--REVVDAMLASPDYLDPAEARAEKATGAWADVDPPVLDAELDEHLVALPNGRYGWRI----SLPAMVCYWSELARDIVLPPVGTATTLVRAVRASPAYVSDQLLAALDKRLGADFELLDF--DCGHMVPQAKPTEVAAVIRSRLGPR
3P2M Chain:A ((107-329))
----PALAVDLPGHGHSAWREDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTA----------EREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDV--DALSAPI----TLVRG--GSSGFVTDQDTAELHRR-ATHFRGVHIVEKSGHSVQSDQPRALIEIVRGVLDT-
General information:
TITO was launched using:
RESULT:
Template:
3P2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121152 for 1472 contacts (-82.3/contact) +
2D Compatibility (PS) -21977 + (NN) -19898 + (LL) 2420
1D Compatibility (HY) -8800 + (ID) 3100
Total energy: -172507.0 ( -117.19 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3P2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P2M-query.scw
PDB file :
Tito_Scwrl_3P2M.pdb
: