Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLNGKTMFISGASRGIGLAIAKRAARDGANIALIAKTAEPHPKLPGTVFTAAKELEEAGGQALPIVGDIRDPDAVASAVATTVEQFGGIDICVNNASAINLGSITEVPMKRFDLMNGIQVRGTYAVSQACIPHMKGRENPHILTLSPPILLEKKWLRPTAYMMAKYGMTLCALGIAEEMRADGIASNTLWPRTMVATAAVQNLLGGDEAMARSRKPEVYADAAYVIVNKPATEYTGKTLLCEDVLVESGVTDLSVYDCVPGATLGVDLWVEDANPPGYLPA
3SC4 Chain:A ((6-282))
-SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLLGGDEAMARSRKPEVYADAAYVVLNKPSS-YTGNTLLCEDVLLESGVTDLSVYDCVPGSELGVDLWVDSPNPPGY---
General information:
TITO was launched using:
RESULT:
Template:
3SC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169663 for 2401 contacts (-70.7/contact) +
2D Compatibility (PS) -30025 + (NN) -14705 + (LL) 492
1D Compatibility (HY) -35600 + (ID) 12100
Total energy: -261601.0 ( -108.96 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_3SC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SC4-query.scw
PDB file :
Tito_Scwrl_3SC4.pdb
: