Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP
5D1W Chain:C ((14-205))
-------------IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERH------
General information:
TITO was launched using:
RESULT:
Template:
5D1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139622 for 1414 contacts (-98.7/contact) +
2D Compatibility (PS) -20521 + (NN) -12281 + (LL) 1008
1D Compatibility (HY) -26000 + (ID) 9600
Total energy: -207016.0 ( -146.40 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_5D1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D1W-query.scw
PDB file :
Tito_Scwrl_5D1W.pdb
: