Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAERGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQRLAGKLTRD
3LP6 Chain:D ((1-168))
MTPAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQDRLADVVAAKDAELQRLA------
General information:
TITO was launched using:
RESULT:
Template:
3LP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146257 for 1361 contacts (-107.5/contact) +
2D Compatibility (PS) -19072 + (NN) -13374 + (LL) 144
1D Compatibility (HY) -22000 + (ID) 8350
Total energy: -208909.0 ( -153.50 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_3LP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LP6-query.scw
PDB file :
Tito_Scwrl_3LP6.pdb
: