Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVRAVFRRTVGAQWPILLV-----GSIFAVGFVLAGANFWRRGALLIGIGVGVAA-----VLRLVLSE--------ERAGLLVVR--------SKGIDFVTTVTVAAAMVYIASTIDPLGTG
3GXV Chain:A ((1-122))
MDHLKHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEEDLVAIFAASPIDNIEAYVEEIKNASIKRKLFGLANTIREQAH-
General information:
TITO was launched using:
RESULT:
Template:
3GXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65550 for 582 contacts (-112.6/contact) +
2D Compatibility (PS) -9682 + (NN) -53 + (LL) -172
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -78457.0 ( -134.81 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_3GXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GXV-query.scw
PDB file :
Tito_Scwrl_3GXV.pdb
: