Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGEE
3OEI Chain:A ((2-88))
-SISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAG---
General information:
TITO was launched using:
RESULT:
Template:
3OEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14624 for 429 contacts (-34.1/contact) +
2D Compatibility (PS) -9624 + (NN) -4052 + (LL) 244
1D Compatibility (HY) -9600 + (ID) 4350
Total energy: -42006.0 ( -97.92 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3OEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OEI-query.scw
PDB file :
Tito_Scwrl_3OEI.pdb
: