Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPIGHPAAIALADDAPIITPINSEFGKANRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNRYDYVTTKPLTAAQRAFRQVFEKPDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEIAG
4CVY Chain:A ((5-293))
----ITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPI-------------------------NRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTN------------------------DFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEI--
General information:
TITO was launched using:
RESULT:
Template:
4CVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117077 for 1966 contacts (-59.6/contact) +
2D Compatibility (PS) -26148 + (NN) -13892 + (LL) 3572
1D Compatibility (HY) -32000 + (ID) 12000
Total energy: -197545.0 ( -100.48 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4CVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVY-query.scw
PDB file :
Tito_Scwrl_4CVY.pdb
: