Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAASLSENLSCHSSNMCRLSGNAATNLERPGEEPPGDRCTR------RQAVRPARTLAKK------GNIPVGYYKDEKKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALKGHPDVFDALVVGVPDPRYGQQVAAVVQARPGC-----RPSLAELDSFVRSEIAGYKVPRSLWFVDEVKRSPAGKPDYRWAKEQTEARPADDVHAGHVTSGS
3C5E Chain:A ((374-562))
---------------------------GYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI----RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK---------------
General information:
TITO was launched using:
RESULT:
Template:
3C5E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30650 for 1174 contacts (-26.1/contact) +
2D Compatibility (PS) -19154 + (NN) -13020 + (LL) 1944
1D Compatibility (HY) -6000 + (ID) 2400
Total energy: -69280.0 ( -59.01 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3C5E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C5E-query.scw
PDB file :
Tito_Scwrl_3C5E.pdb
: