Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASSPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDT-FTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA
4D0Y Chain:A ((1-184))
----AEVVNKGDYYSIQGKYDEIIVANKH--------YPLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFR--------SYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVT----EEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGF---------EGGDYVD-
General information:
TITO was launched using:
RESULT:
Template:
4D0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171075 for 1417 contacts (-120.7/contact) +
2D Compatibility (PS) -18676 + (NN) 1185 + (LL) 3896
1D Compatibility (HY) 6800 + (ID) 1100
Total energy: -178970.0 ( -126.30 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_4D0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D0Y-query.scw
PDB file :
Tito_Scwrl_4D0Y.pdb
: