Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDARLAPDMFPLARQVQIASDAAKGAGARLAG-LEV-PSYADTETTFDELQARIARTVEFLEGIREEQLDGAEERNVTLKVRGQEISFNGRDFLFGFALPNFFFHVTTAYAILRHNGVELGKMDFLGGA
2OQM Chain:A ((21-184))
----LYDLTVVQFSKMLKNLNAIFDKAEAFAELKKVDMDVLLNSRLAADQFNLIRQVQIACDTAKVGVARLTGQLETAPKHDDSETTLAELRQRIASVLTYLEGFSEADFANAATIQIS-QPRWQGKYLTGYEFAIEHAIPNLYFHITTAYGILRHNGVEVGKKDYLGAM
General information:
TITO was launched using:
RESULT:
Template:
2OQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81671 for 1205 contacts (-67.8/contact) +
2D Compatibility (PS) -17424 + (NN) -6353 + (LL) 504
1D Compatibility (HY) -13600 + (ID) 3800
Total energy: -122344.0 ( -101.53 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_2OQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OQM-query.scw
PDB file :
Tito_Scwrl_2OQM.pdb
: