Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
1NYE Chain:C ((411-563))TTENLYFQGHMTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS


General information:
TITO was launched using:
RESULT:

Template: 1NYE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59710 for 978 contacts (-61.1/contact) +
2D Compatibility (PS) -15489 + (NN) -909 + (LL) 0
1D Compatibility (HY) -13200 + (ID) 4500
Total energy: -93808.0 ( -95.92 by residue)
QMean score : 0.443

(partial model without unconserved sides chains):
PDB file : Tito_1NYE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NYE-query.scw
PDB file : Tito_Scwrl_1NYE.pdb: