Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MTDNPFATPTAPVQP---PAREVPATTQPYAFIAVLAL------VTCLSFAVSLGIQWYNDIGEIRQRFSEHLQLMAPHWFTGLVFYAAAN--------LLVLHAYREKRQLVEFRPLALLLIGYGLLNLVCGMLAGIGLAPLTLPFYQWVTAQSSYGVWLMAFNEAMSWVYLLLGSLL---PLGLVLLGSRVNSPR--LAEGEEARVAAWQVALGAALCFATLCFKLMQFL---PYALLRYDEPWLYGLYLSGVA---LPAALLFGA--------VCTRLPARLQRFAAGRALLLAVVAMLLWSVALLAVGGGLALLMILGLAPAGIGYTLLVALLGVGLLALLWPIG------RLATRWCYADQLAA------------------------- |
| 4OYF Chain:A ((9-416)) | EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS--ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAA-VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -293972 for 2452 contacts (-119.9/contact) +
2D Compatibility (PS) -34212 + (NN) -15715 + (LL) 344
1D Compatibility (HY) -16400 + (ID) 2900
Total energy: -362855.0 ( -147.98 by residue)
QMean score : 0.213
|
|
|