Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA
4TV4 Chain:A ((23-179))
-AQDIFLKIDGINGESLDDSHKDEIEVLNWNWEIQQ-------------KASVKDLTFEHAIDRASPNLMKYALTGKHVDQAVLVMRKAGG-NPLEYLKLTMSDVIITRVRPSGSRDD-RSRETVSLSFAKVKQEYVVQNAQGGS-GGAVTTSFDIKGNKET
General information:
TITO was launched using:
RESULT:
Template:
4TV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40851 for 985 contacts (-41.5/contact) +
2D Compatibility (PS) -14984 + (NN) -1922 + (LL) -496
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -72653.0 ( -73.76 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_4TV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TV4-query.scw
PDB file :
Tito_Scwrl_4TV4.pdb
: