Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHEHYYVPAQSKWPIIASIGLLVTVFGLGTWFNDLTAGHKESHGPWIFFVGGLIIAYMLFGWFGNVIRESRAGLYSAQMDRSFRWGMSWFIFSEVMFFAAFFGALFYVRHFAGPWLGGEGAKGVAHMLWPNFQYSWPLLQTPDPKLFPPPSAVI-EPWKLPLINTILLVTSSFTVTFAHHAL-KKNKRGPLKAWLALTVLLGIAFLILQAEEYVHAYNELGLTLGAGIYGSTFFMLTGFHGAHVTLGALILGIMLIRILRGHFDAEHHFGFEAASWYWHFVDVVWIGLFIFVYVI
1M56 Chain:I ((4-263))
-AKNHDYHILPPSIWPFMASVGAFVMLFGAVLWMH--------GSGPWMGLIGLVVVLYTMFGWWSDVVTESLEGDHTPVVRLGLRWGFILFIMSEVMFFSAWF------------------WSFFKHALYPMGPES-PIID----GIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA----AFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIW
General information:
TITO was launched using:
RESULT:
Template:
1M56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -201888 for 1767 contacts (-114.3/contact) +
2D Compatibility (PS) -27014 + (NN) -9386 + (LL) 1280
1D Compatibility (HY) -32800 + (ID) 5850
Total energy: -275658.0 ( -156.00 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1M56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M56-query.scw
PDB file :
Tito_Scwrl_1M56.pdb
: