Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQ-EVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPA-DTSKPNYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA
2GGT Chain:A ((6-162))
------------------------------------------------------FSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR
General information:
TITO was launched using:
RESULT:
Template:
2GGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88919 for 1198 contacts (-74.2/contact) +
2D Compatibility (PS) -17073 + (NN) -10694 + (LL) 5564
1D Compatibility (HY) -14000 + (ID) 2450
Total energy: -127572.0 ( -106.49 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_2GGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGT-query.scw
PDB file :
Tito_Scwrl_2GGT.pdb
: