Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPI--EVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQP--YLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG
2IMD Chain:A ((3-184))
----VDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGIPLVF----PANYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLESAMGR
General information:
TITO was launched using:
RESULT:
Template:
2IMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110488 for 1343 contacts (-82.3/contact) +
2D Compatibility (PS) -19172 + (NN) -7590 + (LL) 420
1D Compatibility (HY) -12400 + (ID) 3150
Total energy: -152380.0 ( -113.46 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2IMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMD-query.scw
PDB file :
Tito_Scwrl_2IMD.pdb
: