Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQ-GAGRPSEVPGVRTLTLERWPFSAPFRVKGKEIQILRIDRVEITP----
3BPQ Chain:B ((3-88))
--VLFAKTFVKDLKHV---------PGHIRKRIKLIIEECQNSNSLNLKLDIKKIKGYHNYYRIRVG--NYSIGIEVNGDTIIFRRVLHRKSIYDYFP
General information:
TITO was launched using:
RESULT:
Template:
3BPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42228 for 514 contacts (-82.2/contact) +
2D Compatibility (PS) -8348 + (NN) -537 + (LL) 1180
1D Compatibility (HY) -5600 + (ID) 550
Total energy: -56083.0 ( -109.11 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3BPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BPQ-query.scw
PDB file :
Tito_Scwrl_3BPQ.pdb
: