Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTMNGQPAELHRPIPTLARLPRPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAE--GSFFAPPQRAIWIPAQLEHEVVTST----RAEMRSLYIRGDACAWAP----TR---CRVLEVTPLARELIKSFCELPVDYPEGDSAESRLVQVLLDQLRLLPEVAFSLPMPREPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLSRLFQRETGMNYRLWRQRQRLLASLNALEAGD-SVTGAALDSGYDSTSAYIAAFKGLFGFTPGELFRQR
3GBG Chain:A ((18-269))
--------------------------------DTYIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILG-NKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKY--NSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFML
General information:
TITO was launched using:
RESULT:
Template:
3GBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105712 for 1667 contacts (-63.4/contact) +
2D Compatibility (PS) -25041 + (NN) -12095 + (LL) 2676
1D Compatibility (HY) -12000 + (ID) 1250
Total energy: -153422.0 ( -92.03 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3GBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBG-query.scw
PDB file :
Tito_Scwrl_3GBG.pdb
: