Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQAREGAPLNRYYDPYFACDAVKLLPGEYFASGEDLVIVTV-LGSCVSVCLRDPLNGIAGMNHFMLPERGLGGDPASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISAAIGQRNVEFTLDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRERDYRRRIDRNADGGPIDLF
2F9Z Chain:C ((-1-157))
--------------------HMKKVIGIGEYAVMKNPGVIVTLGLGSCVAVCMRDPVAKVGAMAHVMLPDSG---GKTDKPGKYADTAVKTLVEELKKMGAKVERLEAKIAGGASMFESKGMNIGARNVEAVKKHLKDFGIKLLAEDTGGNRARSVEYNIETGKLLVRKVLEIKEI-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2F9Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80241 for 1294 contacts (-62.0/contact) +
2D Compatibility (PS) -16366 + (NN) -5551 + (LL) 2296
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -112562.0 ( -86.99 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2F9Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9Z-query.scw
PDB file :
Tito_Scwrl_2F9Z.pdb
: