Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSSADKSRALAAELEGAGASILALHADSADAAALVAAVDEAAARFGRIDILVNNAAVLALGSVEELPLADFERTLAINVRSVFVATQAAVKHMGDGGRVISIGSTNAERMPFAGGATYAMSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGDFAEALKGLMALPRYARSEEIASFVAYLAGPEAAYITGASLTIDGGFSA
3V2G Chain:A ((25-271))
---TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGANA
General information:
TITO was launched using:
RESULT:
Template:
3V2G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137320 for 2169 contacts (-63.3/contact) +
2D Compatibility (PS) -28076 + (NN) -22798 + (LL) 372
1D Compatibility (HY) -16400 + (ID) 6750
Total energy: -210972.0 ( -97.27 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3V2G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V2G-query.scw
PDB file :
Tito_Scwrl_3V2G.pdb
: