Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQASSTDTPFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAGRMPRKLYASASSPLDGLID
1WV2 Chain:A ((1009-1251))
--------TPFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTN-------------IPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAGRMPRK--------------
General information:
TITO was launched using:
RESULT:
Template:
1WV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198717 for 2019 contacts (-98.4/contact) +
2D Compatibility (PS) -26028 + (NN) -15476 + (LL) 1136
1D Compatibility (HY) -34000 + (ID) 11500
Total energy: -284585.0 ( -140.95 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1WV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WV2-query.scw
PDB file :
Tito_Scwrl_1WV2.pdb
: