Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG
2IYN Chain:C ((4-120))
--RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTA------------TGADDYITKPFSPKELVARIKAVMRR
General information:
TITO was launched using:
RESULT:
Template:
2IYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64586 for 791 contacts (-81.7/contact) +
2D Compatibility (PS) -11183 + (NN) -6129 + (LL) 944
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -93204.0 ( -117.83 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_2IYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IYN-query.scw
PDB file :
Tito_Scwrl_2IYN.pdb
: