Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKKTLAALALGSALFTAGQAMAADYKIDKEGQHAFIEFRIKHLGYSWLYGRFNDFDGSFTFDEKNPSADKVKVTINTNSVDTNHAERDKHLRSGDFLNVSKNPTATFESTEVKANGDSADITGNLTLNGVTKPVTIKAKLIGQGDDPWGGYRAGFEGSATLKLKDFGIKMDLGPASQEVELLLSVEGIRQ
1Y0G Chain:B ((23-190))
-----------------------ADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLGPASQEVDLIISVEGVQQ
General information:
TITO was launched using:
RESULT:
Template:
1Y0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55894 for 1196 contacts (-46.7/contact) +
2D Compatibility (PS) -17748 + (NN) -6096 + (LL) 2416
1D Compatibility (HY) -16800 + (ID) 6600
Total energy: -100722.0 ( -84.22 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0G-query.scw
PDB file :
Tito_Scwrl_1Y0G.pdb
: