Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVASKEPIMSQSERRFSFEFFPAKTEAGHEKLLATARNLAGYKPDFFSCTYGAGGSTRDRTLSTVLQLDGEVKVPTAPHLSCVGDSKAELRELLGRYREAGIRRIVALRGDLPSGMGMASGELRYANELVDFIRTETGDHFHIEVAAYPEVHPQARSFEDDLANFVRKVKAGASSAITQYFFNADAYFYFVERVAKLGVDIPVVPGIMPITNYSKLARFSDACGAELPRWIRKQLEAYGDDSRSIQAFGEQVISEMCERLLEGGAPGLHFYTLNQADPSLAIWKNLQLPR
1ZRQ Chain:A ((20-290))
----------QGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGA-----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLP------E---MYASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRP
General information:
TITO was launched using:
RESULT:
Template:
1ZRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165456 for 2119 contacts (-78.1/contact) +
2D Compatibility (PS) -28601 + (NN) -17462 + (LL) 1100
1D Compatibility (HY) -24000 + (ID) 5400
Total energy: -239819.0 ( -113.18 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1ZRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZRQ-query.scw
PDB file :
Tito_Scwrl_1ZRQ.pdb
: