Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGAA
3OM8 Chain:A ((4-266))
-GNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA-
General information:
TITO was launched using:
RESULT:
Template:
3OM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195771 for 2335 contacts (-83.8/contact) +
2D Compatibility (PS) -27547 + (NN) -8709 + (LL) 352
1D Compatibility (HY) -34800 + (ID) 13150
Total energy: -279625.0 ( -119.75 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3OM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OM8-query.scw
PDB file :
Tito_Scwrl_3OM8.pdb
: