Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
2YBO Chain:A ((18-273))
----------LDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVG--------PQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLG-------------
General information:
TITO was launched using:
RESULT:
Template:
2YBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207999 for 2076 contacts (-100.2/contact) +
2D Compatibility (PS) -27632 + (NN) -15224 + (LL) 1632
1D Compatibility (HY) -35200 + (ID) 12400
Total energy: -296823.0 ( -142.98 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2YBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YBO-query.scw
PDB file :
Tito_Scwrl_2YBO.pdb
: