Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSETFTKGMARNIYFGGSVFFILLFLALTYHTEKTLPERTNEAAMSAAVVRGKLVWEQNNCVGCHTLLGEGAYFAPELGNVVGRRGGEEGFNTFLQAWMNIQPLNVPGRRAMPQFHLSEGQVDDLAEFLKWSSKIDTNQWPPNKEG
3WFD Chain:C ((5-146))
----FTKGMARNIYFGGSVFFILLFLALTYHTEKTLPERTNEAAMSAAVVRGKLVWEQNNCVGCHTLLGEGAYFAPELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQFHLSEGQVDDLAEFLKWSSKIDTNQWPPNKEG
General information:
TITO was launched using:
RESULT:
Template:
3WFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35294 for 870 contacts (-40.6/contact) +
2D Compatibility (PS) -15057 + (NN) -10148 + (LL) 336
1D Compatibility (HY) -20000 + (ID) 7050
Total energy: -87213.0 ( -100.24 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_3WFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WFD-query.scw
PDB file :
Tito_Scwrl_3WFD.pdb
: