Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIRPSLPLAGLLLAVALPLSAAQPGAAKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEHCTEAGLLRENKQKVIDSEREVSEREKDLRKAMGKGDPEKIEKRKAKLAEARAELEEAKKGLEQAQAQ
2PMS Chain:C ((1-125))
-------------------------GSHMDAEEVAPQAKIAELENQVHRLEQELKEIDEAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEE-----EDYFKEGLEKTIAAKKAELEKTEADLKKAVNE
General information:
TITO was launched using:
RESULT:
Template:
2PMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 30408 for 593 contacts (51.3/contact) +
2D Compatibility (PS) -12565 + (NN) -10670 + (LL) 2032
1D Compatibility (HY) -800 + (ID) 1050
Total energy: 7355.0 ( 12.40 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_2PMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMS-query.scw
PDB file :
Tito_Scwrl_2PMS.pdb
: