Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSESDRLFAQPQQRVADFVFNEDVVRVFPDMIKRSVPGYPTIVENIGVLGAQFAQPNSVLYDLGCSLGAVTQSLRRHVRNDGCRVIGVDNSHAMIERCSEYLHAQDAMYQELLPVELIEADILALDLQPTSLVAMNFTLQFVAPDQRLGLLRRIRQALLPGGALILSEKLRFADAQEHALLTDLHIAFKRANGYSELEIAQKRSALENVMLPDTFEEHRERLLAAGFSRVSQWFQCLNFASMIALP
1IM8 Chain:A ((20-243))
-----------------FIFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI----AAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK
General information:
TITO was launched using:
RESULT:
Template:
1IM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178254 for 1830 contacts (-97.4/contact) +
2D Compatibility (PS) -23906 + (NN) -5198 + (LL) 1544
1D Compatibility (HY) -25200 + (ID) 5900
Total energy: -236914.0 ( -129.46 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1IM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM8-query.scw
PDB file :
Tito_Scwrl_1IM8.pdb
: