Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELILLHNPRCSKSRAALELLEARGLQPQVVRYLETPPSAAELKAILAKLGIP-ARQLLRTGEDEYKALGLDEPSLGEEAIIEAMARHPKLIERPVLVAGDKAVVGRPPERVLEILA
3RDW Chain:A ((6-120))
--DVTIYHNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGFSDARQLMRTKEDLYKTLNLDDRGLTQDQLLQAMADNPKLIERPIVVTQGKARIGRPPEQVLEIL-
General information:
TITO was launched using:
RESULT:
Template:
3RDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85238 for 863 contacts (-98.8/contact) +
2D Compatibility (PS) -12541 + (NN) -7576 + (LL) 324
1D Compatibility (HY) -13600 + (ID) 3300
Total energy: -121931.0 ( -141.29 by residue)
QMean score : 0.864
(partial model without unconserved sides chains):
PDB file :
Tito_3RDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RDW-query.scw
PDB file :
Tito_Scwrl_3RDW.pdb
: